Split Reads
Confluence Mobile - Integrated Genome Browser Help Pages
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing | Scientific Reports
Frontiers | SIns: A Novel Insertion Detection Approach Based on Soft-Clipped Reads
sequence alignment - What is local realignment and what is the problem it solves? - Bioinformatics Stack Exchange
ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly | Genome Medicine | Full Text
Split Reads
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Challenges and importance of mid-sized deletion identification for genomic medicine - SeqOne Genomics
Sequencing artifacts derived from a library preparation method using enzymatic fragmentation | PLOS ONE
Frontiers | MATCHCLIP: locate precise breakpoints for copy number variation using CIGAR string by matching soft clipped reads
Soft Clipping: Explained + How To Use It
Alignment with STAR | Introduction to RNA-Seq using high-performance computing - ARCHIVED
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Confluence Mobile - Integrated Genome Browser Help Pages
eKLIPse: a sensitive tool for the detection and quantification of mitochondrial DNA deletions from next-generation sequencing data - ScienceDirect
VarDict uses soft-clipped reads for local realignment to... | Download Scientific Diagram
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Hepatitis Delta Virus Genome RNA Synthesis Initiates at Position 1646 with a Nontemplated Guanosine | Journal of Virology
Common sources of 5′end soft clipping and mismatches in 3′ end seq. (a)... | Download Scientific Diagram
Manipulating NGS data with Galaxy - Galaxy Community Hub
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
